Unanchored bac pseudomolecule
Web20 Dec 2005 · The physical fractional (PF) position of a BAC/PAC on a pseudomolecule of rice chromosome 5 (physical map) was calculated as (M X /M T)×122.3; M X was the physical size (in megabase, Mb) of the fragment between the position of the BAC clone and the north end of the chromosome 5 pseudomolecule; M T was the physical size of the … Web6 Oct 2014 · In order to analyze the most complete set of M. truncatula CEP genes, a hybrid assembly was produced consisting of version 4.0 pseudomolecules and version 3.5.2 unanchored BACs and unplaced contigs. A second round of visual inspection of CEP sequences identified in the hybrid assembly confirmed that version 4.0 pseudomolecule …
Unanchored bac pseudomolecule
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Web8 Jun 2014 · Common bean ( Phaseolus vulgaris L.) is the most important grain legume for human consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric nitrogen. We... Web27 Aug 2013 · 基因模块在数据库中有唯一的合适名字，并且它们和相应的转录单位也被连接起来。合适名字采取x.myyyyy的形式，其中x代表BAC或者模拟分子收录ID，yyyyy是指基因模块独特的标识符。 其中Pseudomolecule：模拟分子；feat_name：合适名字。
Web1 Jul 2010 · We found that Gm11 BAC 4, which is located 1.8 Mb 3′ of BAC 3 and 4.2 Mb 5′ of BAC 5 in the Gm11 pseudomolecule, hybridized to the short arm of Gm11 as expected (Figure 7C, column 2, red probe). However, the probe hybridized to chromosome 13 in P.I. 464890B ( Figure 7C , column 3, red probe). WebThe rice pseudomolecules have been reconstructed using an optimal BAC tiling path that involved use of a BAC-optical map and error correction of the underlying BAC sequence using next generation sequencing reads from Nipponbare rice.
Web27 Apr 2024 · The main steps for the construction of the map-based reference sequence of the barley genome were (i) shotgun and mate-pair sequencing of BAC clones, (ii) sequence assembly of individual BAC ... Web27 Apr 2014 · The Mt4.0 pseudomolecules encompass ~360 Mb of actual sequences spanning 390 Mb of which ~330 Mb align perfectly with the optical map, presenting a drastic improvement over the BAC-based Mt3.5 which only contained 70% sequences (~250 Mb) …
Web22 Apr 2024 · BACs with significant overlap are assembled into BAC contigs that are subsequently anchored to chromosomes using genetic maps (Luo et al., 2013) or BAC-FISH analysis (Shearer et al., 2014). A BAC-based physical map can provide the backbone onto …
Web27 Sep 2024 · Each BAC clone sequence was aligned with pseudomolecule sequences of “OUH602” and “Morex” V3 using minimap2 version 2.17 with the asm5 preset (Li 2024). Results and discussion Genome assembly. We generated the genome assembly from PE … black and gold certificateWeb16 Aug 2011 · Specific contigs (anchored and unanchored) are described in Additional file 3: Table S3 and Additional file 4: Table S4. Figure 2 A cMAP view of the 49 anchored T. cacao BAC contigs arranged and oriented as pseudomolecules according to the integrated genetic map spanning the 10 chromosomes. dave berry 2022 year in reviewWebDownload Table Pseudomolecule Statistics from publication: A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6 The fermented dried seeds of Theobroma cacao (cacao tree ... dave berry absolute radio twitterWeb31 Oct 2011 · The pseudomolecules have been reconstructed. Improved BAC sequences that have become available at Genbank/EMBL/DDBJ have been incorporated into the pseudomolecules. Improvements have been made to the pseudomolecules based on the … black and gold centerpieces diyhttp://rice.uga.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_7.0/README dave bentley cyclingdave berry 2022 reviewWeb10 May 2024 · all.con: complete genome sequence for each of the 12 pseudomolecules, the Syngenta pseudomolecule and the unanchored BAC pseudomolecule. Try that and be sure to read documentation. ADD COMMENT • link 2.7 years ago by ATpoint 67k 0 all.con is a … black and gold centerpiece ideas